I never had a lot of success cutting plastic. Using a cutter specifically designed for plastic at the manufacturer suggested feed and speed gave me the best results, but they were still far from ideal, i.e., lots and lots of handwork.
I got basically the same rough (chatter) marks on my PRT-Alpha with non-geared motors, my PRT-Alpha upgraded with a 3:1 belt-drive and my PRT-Alpha that had been upgraded to the 7.2:1 geared Alpha motors when cutting plastic.
There is also a lot of misunderstanding about stepper motors, particularly the PK299-F4.5 with belt-drive vs the Alpha 7.2 geared motor. The PK299 motor is larger and has more holding torque (880 oz*in when wired parallel). With a 3.6:1 belt-drive, that will give you 3,168 oz*in holding torque, or about 200 lb*in. The Oriental Alpha motor is limited to about 80 lb*in.
The PK299-F4.5 will easily spin at 1,000 RPM when powered by a 45 VDC power supply. Using a 30-tooth pinion gear, that means that the axis is traveling at 21 ips. (Oriental Motor recommends a maximum gearbox RPM that would give 20-IPS for the Alpha.) Running the motor at 1,000 RPM requires 33,333 pulses per second. I use Mach 3 on my test bench which allows me to run at 45,000 pulses per second without doing anything special. I BELIEVE that the Shopbot controller can handle 30,000 pulses per second, but I have not tried it.
Resolution for a PK299-F4.5 geared 3.6:1 is exactly the same as the Alpha geared 7.2:1. The Geckodrive G203v requires 2,000 pulses per revolution. The Alpha requires 1,000 pulses, so the Alpha moves an axis 2X farther per step, which also means that its 7.2:1 gearbox gives the same distance per step as a Gecko drive driven 3.6:1 gearbox.
You lose the Alpha MODE capability of the Alpha motors; however, with 2.5X more torque, you shouldn't need the Alpha mode if you use similar speeds and feeds.
The PRS-Standard is a fine machine and so is the PRS-Alpha. Both will give amazing results if you, the operator, do your part. If you have a Geckodrive equipped PRS-Standard, you can add belt-drive, new motors, and a 45VDC to 50VDC power supply to give you a machine that will give the PRS-Alpha a run for the money.
NOTE: At 50VDC, the PK299-F4.5 motors can run HOT, too hot to touch, so be careful. Those motors are rated at 80-Centigrade, so they can handle the heat, but your skin will blister if you touch a hot motor.