David,
If you air cut this part, can you see any indication of a dwell at that point? If it pauses at all at that spot, you could get those marks from deflection in the gantry when it takes off again.
Try cutting at a different location on the table. Maybe you have a slight divot/nick in one of your rails.
VectorCam, not the fastest tool in the tool box, but if you learned how to use it well, there wasn't much you couldn't do with it. I still use it from time to time when I need a custom toolpath that can't be done with anything else.
If you can't find a mechanical reason, I can take a look at the file for you Dave.
Scott