Ken,
I went back and looked at your first pic and see what you are talking about with the mounting of the motors. I haven't used mine enough but can state for sure that the slightest amount of leakage can really hurt the amount of vacuum. I question the mounting for 2 reasons, heat build up (which I can tell you is hot) and if you will be losing any vacuum due to not having a gasket. I can't answer any of these questions reliably but can say that when i put my box together, I failed to silicone the small vacuum area front and back boards and that even though every thing was screwed down tight I still lost most of the vacuum before it ever reached the table. I went back and completely sealed every joint in that small chamber and I was then getting 8" of vacuum.
Hope this helps,
Joe
2005 PRT Alpha 48x96
2013 Colombo 3hp spindle
Indexer (converted lathe)
Aspire 9.0