When you have your original model (let's say 0.12"), and you slice it into two slices. It creates a total of 3 components which it adds together (0.12 + 0.06 +0.06) for 0.24".
Turn off the original layer and select all components. Check the height using the Scale Z height of model it will now be 0.12 as expected. Turn off one of the slice layers and check
the z height again - it will be 0.06. So bottom line, turn off the unwanted layers before creating the tool path. Took me a while to figure this out as well.
Cheers!
"Out of my mind.....back in 5 minutes"