Doug, use the XYZ channels as guides, hook up the indexer in the same way. The ribbon cable orientation will work for the indexer the same as it works for the other channels.
Be sure to use the heat sink grease when you mount the driver. There is a lot of heat generated in those boxes and it must be "vented" to the back of the control box so it can dissipate. This mount must be thermal as well as mechanical.
As you come up with the extra questions there is quite a group of us that enjoy our indexers, and keeps finding new things to do with them.
Keep us posted on your progress, and show off your creations!
D
"The best thing about building something new is either you succeed or learn something. Its a win-win situation."
--Greg Westbrook